Skip to main navigation menu Skip to main content Skip to site footer

Evaluation of the genetic stability of Leptospira reference strains maintained under two conservation methods

Evaluation of the genetic stability of Leptospira reference strains maintained under two conservation methods




Section
Artículo Original

How to Cite
Patiño Burbano, R. E., Beltran, O. G., Torres Higuera, L. D., & Rodríguez Bautista, J. L. (2022). Evaluation of the genetic stability of Leptospira reference strains maintained under two conservation methods. NOVA, 20(39), 65-79. https://doi.org/10.22490/24629448.6585

Dimensions
PlumX
license

Licencia Creative Commons

NOVA by http://www.unicolmayor.edu.co/publicaciones/index.php/nova is distributed under a license creative commons non comertial-atribution-withoutderive 4.0 international.

Furthermore, the authors keep their property intellectual rights over the articles.

 

Rocio Esperanza Patiño Burbano

    Oscar Gabriel Beltran

      Ligia Denise Torres Higuera

        Jose Luis Rodríguez Bautista


          The methodologies to preserve reference strains of Leptospira spp. require conservation techniques that guarantee their viability, avoid contamination and maintain the original genetic characteristics of the strains. The diversity in the genetic reorganization processes of Leptospira spp. needs the development of molecular methodologies that allow monitoring the genetic stability of the strains under different conservation methods. In this sense, this study established the conservation degree of the 16S rRNA and ompL1 genes of 10 reference serovars from the collection of Leptospira spp. that belongs to the Sistema de Bancos de Germoplasma de la Nación para la Alimentación y la Agricultura. Additionally, this allowed to corroborate that the serovars had not undergone significant changes, since similarities higher than 99.69% for 16S rRNA and 99.02% for ompL1 were found in the paired alignments. Thus, genetic stability and purity of the Leptospira spp. reference strains maintained for about eight years in cryopreservation facilities in liquid nitrogen and at room temperature were confirmed.


          Article visits 128 | PDF visits 147


          Downloads

          Download data is not yet available.
          1. Prabhu N, Prabhu SS, Thanveer M, Revathi N, Josna N, Darsana R, et al. Differentiation of parasitic and saprophytic leptospirae by oxidase test - A hasty modus operandi. African J Microbiol Res. 2009;3(5):212-4.
          2. Wuthiekanun V, Amornchai P, Paris DH, Langla S, Thaipadunpanit J, Chierakul W, et al. Rapid Isolation and Susceptibility Testing of Leptospira spp. Using a New Solid Medium, LVW Agar. Antimicrob Agents Chemother. 2013;57(1):297-302.
          3. https://doi.org/10.1128/AAC.01812-12
          4. Ferreira AS, Costa P, Rocha T, Amaro A, Vieira ML, Ahmed A, et al. Direct detection and differentiation of pathogenic Leptospira species using a multi-gene targeted real time PCR approach. PLoS One. 2014;9(11).
          5. https://doi.org/10.1371/journal.pone.0112312
          6. Cerqueira GM, Picardeau M. A century of Leptospira strain typing. Infect Genet Evol. 2009;9(5):760-8.
          7. https://doi.org/10.1016/j.meegid.2009.06.009
          8. Balamurugan V, Gangadhar NL, Mohandoss N, Thirumalesh SRA, Dhar M, Shome R, et al. Characterization of leptospira isolates from animals and humans: Phylogenetic analysis identifies the prevalence of intermediate species in India. Springerplus. 2013;2(1):1-9.
          9. https://doi.org/10.1186/2193-1801-2-362
          10. Mgode GF, Machang RS, Collares-pereira M, Vieira ML, Goris MG a, Engelbert M, et al. Challenges in determining the pathogenicity status of Leptospira isolates with phenotypic methods : The need for a polyvalent approach. African J Microbiol Res. 2010;4(23):2528-33.
          11. Chang YF, Chen CS, Palaniappan RUM, He H, McDonough SP, Barr SC, et al. Immunogenicity of the recombinant leptospiral putative outer membrane proteins as vaccine candidates. Vaccine. 2007;25(48):8190-7.
          12. https://doi.org/10.1016/j.vaccine.2007.09.020
          13. Boonsilp S, Thaipadungpanit J, Amornchai P, Wuthiekanun V, Bailey MS, Holden MTG, et al. A Single Multilocus Sequence Typing (MLST) Scheme for Seven Pathogenic Leptospira Species. PLoS Negl Trop Dis. 2013;7(1).
          14. https://doi.org/10.1371/journal.pntd.0001954
          15. Boonsilp S, Thaipadungpanit J, Amornchai P, Wuthiekanun V, Chierakul W, Limmathurotsakul D, et al. Molecular detection and speciation of pathogenic Leptospira spp. in blood from patients with culture-negative leptospirosis. BMC Infect Dis. 2011;11(1):338.
          16. https://doi.org/10.1186/1471-2334-11-338
          17. Vincent AT, Schiettekatte O, Goarant C, Neela VK, Bernet E, Thibeaux R, et al. Revisiting the taxonomy and evolution of pathogenicity of the genus Leptospira through the prism of genomics. PLoS Negl Trop Dis. 2019 May 1;13(5).
          18. https://doi.org/10.1371/journal.pntd.0007270
          19. Masuzawa T, Saito M, Nakao R, Nikaido Y, Matsumoto M, Ogawa M, et al. Molecular and phenotypic characterization of Leptospira johnsonii sp. nov., Leptospira ellinghausenii sp. nov. and Leptospira ryugenii sp. nov. isolated from soil and water in Japan. Microbiol Immunol. 2019;63(3-4):89-99.
          20. https://doi.org/10.1111/1348-0421.12671
          21. Caimi K, Ruybal P. Leptospira spp., a genus in the stage of diversity and genomic data expansion. Infect Genet Evol. 2020;81(August 2019).
          22. https://doi.org/10.1016/j.meegid.2020.104241
          23. Cilia, Giovanni; Bertelloni F, Albini S, Fratini F. Insight into the Epidemiology of Leptospirosis : A Review of. Animals. 2021;11(191):1-16.
          24. https://doi.org/10.3390/ani11010191
          25. Guglielmini J, Bourhy P, Schiettekatte O, Zinini F, Brisse S, Picardeau M. Genus-wide Leptospira core genome multilocus sequence typing for strain taxonomy and global surveillance. PLoS Negl Trop Dis. 2019;13(4):1-23.
          26. https://doi.org/10.1371/journal.pntd.0007374
          27. Koval AA, Brihuega BF, Grune Loffler S, López S, Saint Martin M, Lagioia GG, et al. First isolation of Leptospira borgpetersenii serovar Hardjo type Hardjo Bovis from a clinical case in cattle in Argentina. Rev Argent Microbiol. 2020;52(3):198-201.
          28. https://doi.org/10.1016/j.ram.2019.10.002
          29. Miller E, Barragan V, Chiriboga J, Weddell C, Luna L, Jiménez DJ, et al. Leptospira in river and soil in a highly endemic area of Ecuador. BMC Microbiol. 2021;21(1):1-11.
          30. https://doi.org/10.1186/s12866-020-02069-y
          31. Bulach DM, Zuerner RL, Wilson P, Seemann T, McGrath A, Cullen PA, et al. Genome reduction in Leptospira borgpetersenii reflects limited transmission potential. Proc Natl Acad Sci. 2006;103(39):14560-5.
          32. https://doi.org/10.1073/pnas.0603979103
          33. Ren SX, Fu G, Jiang XG, Zeng R, Miao YG, Xu H, et al. Unique physiological and pathogenic features of Leptospira interrogans revealed by whole-genome sequencing. Nature. 2003;422(6934):888-93.
          34. https://doi.org/10.1038/nature01597
          35. Picardeau M, Bulach DM, Bouchier C, Zuerner RL, Zidane N, Wilson PJ, et al. Genome sequence of the saprophyte Leptospira biflexa provides insights into the evolution of Leptospira and the pathogenesis of leptospirosis. PLoS One. 2008;3(2):1-9.
          36. https://doi.org/10.1371/journal.pone.0001607
          37. Nascimento A, Ko A, Martins E, Monteiro B, Ho P, Haake D, et al. Comparative Genomics of Two Leptospira interrogans Serovars Reveals Novel Insights into Physiology and Pathogenesis. J Bacteriol. 2004;186(7):2164-72.
          38. https://doi.org/10.1128/JB.186.7.2164-2172.2004
          39. Haake DA, Chao G, Zuerner RL, Barnett JK, Barnett D, Mazel M, et al. The leptospiral major outer membrane protein LipL32 is a lipoprotein expressed during mammalian infection. Infect Immun. 2000;68(4):2276-85.
          40. https://doi.org/10.1128/IAI.68.4.2276-2285.2000
          41. Philip N, Garba B, Neela VK. Long-term preservation of Leptospira spp.: challenges and prospects. Appl Microbiol Biotechnol. 2018;102(13):5427-35.
          42. https://doi.org/10.1007/s00253-018-9047-9
          43. Cerqueira GM, McBride AJ., Queiroz A, Pinto LS, Silva ÉF, Hartskeerl RA, et al. Monitoring Leptospira strain collections: The need for quality control. Am J Trop Med Hyg. 2010;82(1):83-7.
          44. https://doi.org/10.4269/ajtmh.2010.09-0558
          45. Borrero R, Batista N, Blain K, Valdés Y. Conservación de cepas vacunales de Leptospira en nitrógeno líquido. Rev Cubana Med Trop. 2010;62(2):130-7.
          46. Borrero R, González A, del Puerto C, Batista N, Valdés Y. Conservación de cepas vacunales de Leptospira a -70 oC. Rev Cubana Med Trop. 2006;58(1):50-5.
          47. Kim M, Oh HS, Park SC, Chun J. Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes. Int J Syst Evol Microbiol. 2014;64(PART 2):346-51.
          48. https://doi.org/10.1099/ijs.0.059774-0
          49. Morey RE, Galloway RL, Bragg SL, Steigerwalt AG, Mayer LW, Levett PN. Species-specific identification of Leptospiraceae by 16S rRNA gene sequencing. J Clin Microbiol. 2006;44(10):3510-6.
          50. https://doi.org/10.1128/JCM.00670-06
          51. Cerqueira GM, McBride AJA, Hartskeerl RA, Ahmed N, Dellagostin OA, Eslabão MR, et al. Bioinformatics describes novel loci for high resolution discrimination of Leptospira isolates. PLoS One. 2010;5(10).
          52. https://doi.org/10.1371/journal.pone.0015335
          53. Haake DA, Suchard MA, Kelley MM, Dundoo M, Alt DP, Zuerner RL. Molecular evolution and mosaicism of leptospiral outer membrane proteins involves horizontal DNA transfer. J Bacteriol. 2004;186(9):2818-28.
          54. https://doi.org/10.1128/JB.186.9.2818-2828.2004
          55. Rajapakse S, Rodrigo C, Handunnetti SM, Fernando DD. Current immunological and molecular tools for leptospirosis: Diagnostics, vaccine design, and biomarkers for predicting severity. Ann Clin Microbiol Antimicrob. 2015;14(1):1-8.
          56. https://doi.org/10.1186/s12941-014-0060-2
          57. Feng CY, Li QT, Zhang XY, Dong K, Hu BY, Guo XK. Immune strategies using single-component LipL32 and multi-component recombinant LipL32-41-OmpL1 vaccines against leptospira. Brazilian J Med Biol Res. 2009;42(9):796-803.
          58. https://doi.org/10.1590/S0100-879X2009005000013
          59. Lin X, Sun A, Ruan P, Zhang Z, Yan J. Characterization of conserved combined T and B cell epitopes in leptospira interrogans major outer membrane proteins OmpL1 and LipL41. BMC Microbiol. 2011;11(1):21.
          60. https://doi.org/10.1186/1471-2180-11-21
          61. OIE. Leptospirosis. In: Terrestrial Manual. 2018. p. 503-16.
          62. Fearnley C, Wakeley PR, Gallego-Beltran J, Dalley C, Williamson S, Gaudie C, et al. The development of a real-time PCR to detect pathogenic Leptospira species in kidney tissue. Res Vet Sci. 2008;85(1):8-16.
          63. https://doi.org/10.1016/j.rvsc.2007.09.005
          64. Suzuki MT, Giovannoni SJ. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl Environ Microbiol. 1996;62(2):2-8.
          65. https://doi.org/10.1128/aem.62.2.625-630.1996
          66. Rosario LA, Arencibia DF, Batista N, Jirón W, Suárez YE, Infante JF. Caracterización de aislamientos clínicos de leptospira por métodos fenotípicos y moleculares en la república de nicaragua. Vaccimonitor. 2012;21(3):6-12.
          67. Braun RC, Pedretti KT, Casavant TL, Scheetz TE, Birkett CL, Roberts CA. Parallelization of local BLAST service on workstation clusters. Futur Gener Comput Syst. 2001;17(6):745-54.
          68. https://doi.org/10.1016/S0167-739X(00)00057-1
          69. Thompson J, Higgins D, Gibson T. ClustalW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choise. Nucleic Acids Res. 1994;121(3):1007-9.
          70. Kumar S, Stecher G, Tamura K. MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. Mol Biol Evol. 2016;33(7):1870-4.
          71. https://doi.org/10.1093/molbev/msw054
          72. Agudelo-Flórez P, Londoño AF, Quiroz VH, Ángel JC, Moreno N, Loaiza ET, et al. Prevalence of Leptospira spp. in urban rodents from a Groceries Trade Center of Medellín, Colombia. Am J Trop Med Hyg. 2009;81(5):906-10.
          73. https://doi.org/10.4269/ajtmh.2009.09-0195
          74. Dong H, Hu Y, Xue F, Sun D, Ojcius DM, Mao Y, et al. Characterization of the ompL1 gene of pathogenic Leptospira species in China and cross-immunogenicity of the OmpL1 protein. BMC Microbiol. 2008;8:1-12.
          75. https://doi.org/10.1186/1471-2180-8-223
          76. Dezhbord M, Esmaelizad M, Khaki P, Fotohi F, Moghaddam AZ. Molecular identification of the ompL1 gene within Leptospira interrogans standard serovars. J Infect Dev Ctries. 2014;8(6):688-93.
          77. https://doi.org/10.3855/jidc.3174
          78. Reitstetter RE. Development of species-specific PCR primer sets for the detection of Leptospira. FEMS Microbiol Lett. 2006;264(1):31-9.
          79. https://doi.org/10.1111/j.1574-6968.2006.00431.x
          80. Fernandes LG V., Vieira ML, Kirchgatter K, Alves IJ, de Morais ZM, Vasconcellos SA, et al. OmpL1 Is an Extracellular Matrix- and Plasminogen-Interacting Protein of Leptospira spp. Infect Immun. 2012;80(10):3679-92.
          81. https://doi.org/10.1128/IAI.00474-12
          82. Vedhagiri K, Natarajaseenivasan K, Chellapandi P, Prabhakaran SG, Selvin J, Sharma S, et al. Evolutionary Implication of Outer Membrane Lipoprotein-Encoding Genes ompL1, UpL32 and lipL41 of Pathogenic Leptospira Species. Genomics, Proteomics Bioinforma. 2009;7(3):96-106.
          83. https://doi.org/10.1016/S1672-0229(08)60038-8
          84. Higuera LDT, Ortega DO, Bautista JLR, Burbano REP. Comparación de tres tratamientos para la crioconservación de serovares de Leptospira en nitrógeno líquido. Cienc Tecnol Agropecu. 2009 Jan;9(2):72-6.
          85. https://doi.org/10.21930/rcta.vol9_num2_art:120
          86. Wangroongsarb P, Chanket T, Gunlabun K, Long DH, Satheanmethakul P, Jetanadee S, et al. Molecular typing of Leptospira spp. based on putative O-antigen polymerase gene (wzy), the benefit over 16S rRNA gene sequence. FEMS Microbiol Lett. 2007;271(2):170-9.
          87. https://doi.org/10.1111/j.1574-6968.2007.00711.x
          88. Romero EC, Blanco RM, Galloway RL. Analysis of multilocus sequence typing for identification of Leptospira isolates in Brazil. J Clin Microbiol. 2011;49(11):3940-2.
          89. https://doi.org/10.1128/JCM.01119-11
          90. Bourhy P, Collet L, Lernout T, Zinini F, Hartskeerl RA, Van Der Linden H, et al. Human Leptospira isolates circulating in Mayotte (Indian Ocean) have unique serological and molecular features. J Clin Microbiol. 2012;50(2):307-11.
          91. https://doi.org/10.1128/JCM.05931-11
          92. Verma A, Soto E, Illanes O, Ghosh S, Fuentealba C. Detection and genotyping of Leptospira spp. From the kidneys of a seemingly healthy pig slaughtered for human consumption. J Infect Dev Ctries. 2015;9(5):530-2.
          93. https://doi.org/10.3855/jidc.5727
          94. Rettinger A, Krupka I, Grünwald K, Dyachenko V, Fingerle V, Konrad R, et al. Leptospira spp. strain identification by MALDI TOF MS is an equivalent tool to 16S rRNA gene sequencing and multi locus sequence typing (MLST). BMC Microbiol. 2012;12.
          95. https://doi.org/10.1186/1471-2180-12-185
          96. Tian RM, Cai L, Zhang WP, Cao HL, Qian PY. Rare events of intragenusand intraspecies horizontal transfer of the 16S rRNA gene. Genome Biol Evol. 2015;7(8):2310-20.
          97. https://doi.org/10.1093/gbe/evv143
          98. Tiley GP, Poelstra JW, dos Reis M, Yang Z, Yoder AD. Molecular Clocks without Rocks: New Solutions for Old Problems. Trends Genet. 2020;36(11):845-56.
          99. https://doi.org/10.1016/j.tig.2020.06.002
          100. Kuo CH, Ochman H. Inferring clocks when lacking rocks: The variable rates of molecular evolution in bacteria. Biol Direct. 2009;4(September 2009):35.
          101. https://doi.org/10.1186/1745-6150-4-35
          102. Bierque E, Thibeaux R, Girault D, Soupé-Gilbert ME, Goarant C. A systematic review of Leptospira in water and soil environments. PLoS One. 2020;15(1):1-22.
          103. https://doi.org/10.1371/journal.pone.0227055
          104. Cooper VS, Vohr SH, Wrocklage SC, Hatcher PJ. Why genes evolve faster on secondary chromosomes in bacteria. PLoS Comput Biol. 2010;6(4).
          105. https://doi.org/10.1371/journal.pcbi.1000732
          Sistema OJS 3.4.0.5 - Metabiblioteca |